Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories

9 Nov 2023, 09:45
45m
Lecture Hall (FIAS)

Lecture Hall

FIAS

Ruth-Moufang-Str. 1 60438 Frankfurt am Main

Speaker

Prof. Pieter Rein ten Wolde (AMOLF, Amsterdam)

Description

Most natural and engineered information-processing systems transmit information via signals that vary in time. Computing the information transmission rate or the information encoded in the temporal characteristics of these signals, requires the mutual information between the input and output signals as a function of time, i.e. between the input and output trajectories. Yet, this is notoriously difficult because of the high-dimensional nature of the trajectory space, and all existing techniques require approximations. We present an exact Monte Carlo technique called Path Weight Sampling (PWS) that, for the first time, makes it possible to compute the mutual information between input and output trajectories for any stochastic model. The principal idea is to evaluate the exact conditional probability of an individual output trajectory for a given input trajectory on the fly, and average this via Monte Carlo sampling in trajectory space to obtain the mutual information. Applying PWS to the bacterial chemotaxis system, consisting of 182 coupled chemical reactions, demonstrates not only that the scheme is highly efficient, but also that the number of receptor clusters is much smaller than hitherto believed while their size is much larger.

Presentation materials

There are no materials yet.